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# Atrial septation: septum primum, septum secundum and foramen ovale

- Process

Two overlapping walls divide the atrium and leave a door, the foramen ovale, so blood can cross to the left before birth.

Updated 2026-11-01

**See it in 3D:** [Interatrial septum](https://durgical.com/en/anatomy/interatrial-septum/) · [Right atrium](https://durgical.com/en/anatomy/right-atrium/) · [Left atrium](https://durgical.com/en/anatomy/left-atrium/) · [Pulmonary veins](https://durgical.com/en/anatomy/pulmonary-veins/) · [Coronary sinus](https://durgical.com/en/anatomy/coronary-sinus/) · [Superior vena cava](https://durgical.com/en/anatomy/superior-vena-cava/) · [Inferior vena cava](https://durgical.com/en/anatomy/inferior-vena-cava/)

## Key points

- Septum primum grows toward the endocardial cushions; the gap it leaves is the ostium primum.
- Before the ostium primum closes, cell death opens the ostium secundum in the upper septum primum.
- Septum secundum grows to the right of the primum and leaves the foramen ovale open.
- The septum primum is the valve of the foramen ovale; it closes by pressure at birth and later fuses (fossa ovalis).
- Secundum ASD is the most common (excess resorption of the primum or a short secundum). A patent foramen ovale persists in about one in four adults.

## What it is

Between weeks 4 and 6 the primitive atrium is divided by two septa: the thin septum primum and the thick muscular septum secundum to its right. Between them lies the foramen ovale, a one-way valve that lets blood pass right to left during fetal life. At birth left atrial pressure rises and closes the valve; errors in this process give atrial septal defects.

## Key facts

- End of week 4: the septum primum grows down from the atrial roof.
- Week 5: the ostium secundum opens; the ostium primum closes as the septum primum fuses with the cushions.
- Weeks 5–6: the septum secundum grows but never completes: its free edge rims the foramen ovale.
- At birth: pulmonary resistance falls, left atrial pressure rises and the septum primum is pressed against the secundum.
- Anatomic fusion happens over the first months to years; if it does not, a patent foramen ovale remains.

## Structure

- Septum primum: thin membrane that forms the floor of the fossa ovalis.
- Septum secundum: thick muscular fold that forms the limbus (rim) of the fossa ovalis.
- Foramen ovale: the oblique passage between the two septa.
- The sinus venosus is absorbed into the right atrium and the pulmonary veins into the left atrial wall.

## Step by step

- The septum primum grows down from the atrial roof toward the endocardial cushions.
- The space between its edge and the cushions is the ostium primum.
- Perforations in the upper septum primum merge into the ostium secundum.
- The septum primum fuses with the cushions and closes the ostium primum.
- The septum secundum grows to its right, partly covering the ostium secundum and leaving the foramen ovale.
- In the fetus, blood from the inferior vena cava pushes the valve open and enters the left atrium.
- At birth, higher left atrial pressure shuts the valve; fusion follows later.

## Markers

- TBX5
- NKX2-5
- GATA4

## Clinical notes

- Secundum ASD: the most common; pulmonary flow murmur and a fixed split second heart sound.
- Primum ASD: part of the atrioventricular canal (cushion) defect spectrum.
- Sinus venosus ASD: near the superior vena cava, often with anomalous drainage of right pulmonary veins.
- A patent foramen ovale allows paradoxical embolism: a venous clot crosses to the left side and causes a stroke.

## Memory aid

The primum is the curtain and the secundum is the frame: as long as the curtain swings only to the left, the fetus breathes through the placenta.

## Test yourself

Think of the answer, then tap the question to see it.

## How does the ostium secundum form?

By programmed cell death in the upper septum primum, before the ostium primum closes.

## Which structure acts as the valve of the foramen ovale?

The septum primum, which closes against the septum secundum when left atrial pressure rises at birth.

## What is the most common type of atrial septal defect and its cause?

Secundum ASD: excessive resorption of the septum primum or underdevelopment of the septum secundum.

## Why can a patent foramen ovale cause a stroke?

It lets a venous clot pass right to left (paradoxical embolism), especially when right atrial pressure rises.

[Add to my cards (4)](https://durgical.app/estudiar/?add=/en/embryology/atrial-septation-septum-primum-septum-secundum-and-foramen-ovale/)

## See it in 3D

The structures of Durgical's 3D anatomy where it is found.

- [Interatrial septum](https://durgical.com/en/anatomy/interatrial-septum/)
- [Right atrium](https://durgical.com/en/anatomy/right-atrium/)
- [Left atrium](https://durgical.com/en/anatomy/left-atrium/)
- [Pulmonary veins](https://durgical.com/en/anatomy/pulmonary-veins/)
- [Coronary sinus](https://durgical.com/en/anatomy/coronary-sinus/)
- [Superior vena cava](https://durgical.com/en/anatomy/superior-vena-cava/)
- [Inferior vena cava](https://durgical.com/en/anatomy/inferior-vena-cava/)

## Related

- [Atrial septal defect and patent foramen ovale](https://durgical.com/en/embryology/atrial-septal-defect-and-patent-foramen-ovale/)
- [Atrioventricular septal defect (endocardial cushion defect)](https://durgical.com/en/embryology/atrioventricular-septal-defect/)
- [Ventricular septation and the endocardial cushions](https://durgical.com/en/embryology/ventricular-septation-and-the-endocardial-cushions/)
- [Embryonic heart structures and their adult derivatives (the table to know)](https://durgical.com/en/embryology/embryonic-heart-structures-and-their-adult-derivatives/)
- [Fetal circulation and the changes at birth](https://durgical.com/en/embryology/fetal-circulation-and-the-changes-at-birth/)
- [Heart tube: formation and looping](https://durgical.com/en/embryology/heart-tube-formation-and-looping/)

## Related conditions

- [Atrial septal defect](https://durgical.com/en/conditions/atrial-septal-defect/)
- [Ischaemic stroke](https://durgical.com/en/conditions/ischaemic-stroke/)

[← All of embryology](https://durgical.com/en/embryology/)

Educational content on embryonic development; not a guide to prenatal diagnosis or to medicines in pregnancy and no substitute for a health professional's advice. No doses are given.

Sources: Langman's Medical Embryology, 13th ed., ch. 13: Cardiovascular System (Wolters Kluwer, 2015); [Atrial Septal Defect (ASD) | Congenital Heart Defects (CHDs) | CDC](https://www.cdc.gov/heart-defects/about/atrial-septal-defect.html) (Centers for Disease Control and Prevention, 2024).

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Representative model, for educational purposes only.

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Source: https://durgical.com/en/embryology/atrial-septation-septum-primum-septum-secundum-and-foramen-ovale/
License: CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Cite as: DurgiPedia (durgical.com), https://durgical.com/en/embryology/atrial-septation-septum-primum-septum-secundum-and-foramen-ovale/
