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# Endometrioid, clear cell and Brenner tumours of the ovary

- Lesion

Two ovarian cancers that grow out of endometriosis, and a mostly benign tumour made of cells that look like bladder lining.

Updated Nov 12, 2026

## Key points

- Both endometrioid and clear cell carcinoma arise from endometriosis, often in an endometrioma; ARID1A loss is common to both.
- Endometrioid: glands like endometrium, squamous morules; PTEN, CTNNB1, PIK3CA, KRAS and mismatch repair; often low grade with a good prognosis.
- Synchronous endometrioid tumours of ovary and endometrium are often clonally related but behave well when both are low grade.
- Clear cell: clear and hobnail cells in tubulocystic and papillary patterns; Napsin A and HNF1-beta; poor response to chemotherapy when advanced.
- Brenner tumour: nests of transitional cells with grooved coffee-bean nuclei in dense fibrous stroma; usually benign, unilateral, often incidental.

## What it is

Endometrioid and clear cell carcinomas of the ovary are the endometriosis-associated cancers. Endometrioid carcinoma resembles its endometrial namesake, shares mutations in PTEN, ARID1A, CTNNB1 and the mismatch repair genes, and may coexist with an independent-looking endometrial carcinoma. Clear cell carcinoma has glycogen-rich clear and hobnail cells, ARID1A loss and resistance to chemotherapy. Brenner tumours are usually small, benign, solid tumours of urothelial-like nests in fibrous stroma.

## Structure

- Endometrioid: solid and cystic mass, back-to-back glands with columnar cells, squamous differentiation.
- Clear cell: cells with abundant clear cytoplasm (glycogen) and hobnail nuclei, hyaline basement-membrane material in papillae.
- Brenner: a firm white nodule; urothelial-type nests, sometimes with central mucinous cells; Walthard cell nests on the tube may be their origin.

## Step by step

- Endometriosis on the ovary provides epithelium under chronic oxidative stress from repeated haemorrhage.
- ARID1A, PIK3CA and other mutations accumulate in the endometriotic epithelium.
- Atypical endometriosis develops, then invasive endometrioid or clear cell carcinoma.
- Mismatch-repair defects, sporadic or from Lynch syndrome, contribute in a subset.

## Markers

- PAX8 positive
- ER and PR (endometrioid)
- Napsin A and HNF1-beta (clear cell)
- GATA3 and p63 (Brenner)

## Clinical notes

- Often present at an earlier stage than high-grade serous carcinoma, as a pelvic mass in a woman with endometriosis.
- Ovarian clear cell carcinoma is associated with hypercalcaemia and thromboembolism.
- Patients with endometrioid or clear cell carcinoma are tested for mismatch-repair deficiency.

## Memory aid

Endometriosis grows two daughters: one copies the endometrium, the other wears clear glass and hobnails.

## Test yourself

Think of the answer, then tap the question to see it.

## Which two ovarian carcinomas arise from endometriosis?

Endometrioid carcinoma and clear cell carcinoma.

## Which gene is commonly lost in both?

ARID1A, a chromatin-remodelling tumour suppressor.

## What does a Brenner tumour look like under the microscope?

Nests of urothelial-like (transitional) cells with grooved coffee-bean nuclei in a dense fibrous stroma.

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## Elsewhere in DurgiPedia

- [Ovary: follicles, ovulation and corpus luteum](https://durgical.com/en/histology/ovary-follicles-ovulation-and-corpus-luteum/)

## Connections

## Related 7

- [Endometriosis and adenomyosis](https://durgical.com/en/general-pathology/endometriosis-and-adenomyosis/)
- [Endometrioid endometrial carcinoma](https://durgical.com/en/general-pathology/endometrioid-endometrial-carcinoma/)
- [Ovarian tumours: classification](https://durgical.com/en/general-pathology/ovarian-tumours-classification/)
- [Mucinous ovarian tumours](https://durgical.com/en/general-pathology/mucinous-ovarian-tumours/)
- [Urothelial tumours: morphology, grade and stage](https://durgical.com/en/general-pathology/urothelial-tumours-morphology-grade-and-stage/)
- [Tumour suppressor genes: RB, TP53, APC, BRCA and the two-hit hypothesis](https://durgical.com/en/general-pathology/tumour-suppressor-genes-rb-tp53-apc-brca-and-the-two-hit-hypothesis/)
- [Precancerous conditions: when chronic inflammation, metaplasia or hyperplasia raise the risk](https://durgical.com/en/general-pathology/precancerous-conditions-when-chronic-inflammation-metaplasia-or-hyperplasia-rais/)

## Related conditions 5

- [Ovarian cancer](https://durgical.com/en/conditions/ovarian-cancer/)
- [Endometriosis](https://durgical.com/en/conditions/endometriosis/)
- [Lynch syndrome (hereditary non-polyposis colorectal cancer)](https://durgical.com/en/conditions/lynch-syndrome/)
- [Hypercalcaemia of malignancy](https://durgical.com/en/conditions/hypercalcaemia-of-malignancy/)
- [Ovarian cyst](https://durgical.com/en/conditions/ovarian-cyst/)

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Educational content on the mechanisms of disease; not a diagnostic or treatment guide and no substitute for a health professional's advice. No doses are given.

Sources: [Epithelial Ovarian Cancer](https://www.ncbi.nlm.nih.gov/books/NBK567760/) (StatPearls (NCBI Bookshelf), 2026); [Endometriosis](https://www.ncbi.nlm.nih.gov/books/NBK567777/) (StatPearls (NCBI Bookshelf), 2026).

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Representative model, for educational purposes only.

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Source: https://durgical.com/en/general-pathology/endometrioid-clear-cell-and-brenner-tumours-of-the-ovary/
License: CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/). Cite as: DurgiPedia (durgical.com), https://durgical.com/en/general-pathology/endometrioid-clear-cell-and-brenner-tumours-of-the-ovary/
