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Mitochondrial HMG-CoA synthase (HMGCS2) !

Mitochondrial HMG-CoA synthase is the enzyme that switches on ketone body production in the liver during fasting.

Updated 2026-11-01

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Key facts

  • Rate-limiting step of ketogenesis: acetoacetyl-CoA + acetyl-CoA → HMG-CoA.
  • Mitochondrial and almost liver-only; the cytosolic isoform (HMGCS1) feeds cholesterol synthesis.
  • Its gene is switched on by fasting, glucagon and PPARα, and off by insulin.
Also called
HMG-CoA synthase 2
EC number
2.3.3.10
Genes
HMGCS2
Structure (PDB)
2WYA

Regulation

  • Controlled by enzyme amount: high transcription in fasting (PPARα, FOXA2), low with insulin.
  • Succinylation by succinyl-CoA inactivates it; glucagon lowers that succinylation.

Inhibitors and toxins

  • No inhibitors in clinical use

Clinical notes

  • HMGCS2 deficiency causes crises of hypoketotic hypoglycaemia in infants with fasting or infection.
  • In diabetic ketoacidosis HMGCS2 runs at full speed because the insulin that restrains it is missing.

Pathways

Test yourself

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How do HMGCS1 and HMGCS2 differ?

HMGCS1 is cytosolic and leads to cholesterol; HMGCS2 is mitochondrial and leads to ketone bodies.

How is mitochondrial HMG-CoA synthase regulated?

Mainly by its amount: fasting and glucagon raise its gene and insulin lowers it.

What picture does HMGCS2 deficiency produce?

Hypoglycaemia with low ketones on fasting, similar to a β-oxidation defect.

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Educational information, not medical advice. For any symptom, see a health professional.

Sources: HMGCS2: Hydroxymethylglutaryl-CoA synthase, mitochondrial (human) (UniProt, 2026); Synthesis of Ketone Bodies (Reactome, 2026); 2WYA: Crystal structure of human mitochondrial 3-hydroxy-3-methylglutaryl-coenzyme A synthase 2 (HMGCS2) (RCSB Protein Data Bank, 2026).

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Representative model, for educational purposes only.